PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002738.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 348aa    MW: 36619.8 Da    PI: 6.1384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002738.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.7e-14113159354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++ +++k+L
  Do002738.1 113 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVLDHVKEL 159
                 78*************************9.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.628110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.76E-13113162No hitNo description
PfamPF000103.0E-11113159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-14114167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14114168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.39E-5212261No hitNo description
Gene3DG3DSA:3.30.70.2608.6E-6212261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MWGGGVEHGS QEAAHHQLLP WLAAAPFSEP AVAAGFGAMG AYACDGVGGL GLGHGGVFGF  60
GFDAVQQQQQ RAAEGSGNGK AAAVSGLLGS LQAELGRMTA REMMDAKALA ASRSHSEAER  120
RRRQRINGHL ARLRSLLPNT TKTDKASLLA EVLDHVKELK RQTSAMMAAA AAAVAGDDEG  180
AAGPAQMLPT EADELSVDAA VDRVGQLVLR ASLCCEDRPD LIPDIVRALA ALRMRARRAE  240
ITTLGGRVRS VLLITADDEG ADDDHQGDDE DDDGRRLNAR LLRGDDDDHE RTASSRRRHE  300
CIASVQEALR GVMDRRAASS DTSSSGGGGG SIKRQRMNYG GAQEHCSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9711890.0EU971189.1 Zea mays clone 359116 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008667787.11e-136PREDICTED: uncharacterized protein LOC100279487 isoform X1
TrEMBLA0A096T0511e-136A0A096T051_MAIZE; Uncharacterized protein
STRINGGRMZM2G176141_P011e-136(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-45bHLH family protein